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DRX230456: Sequel sequencing of SAMD00239423
1 PACBIO_SMRT (Sequel) run: 84,545 spots, 189.1M bases, 46Mb downloads

Submitted by: HOKUDAI
Study: Mesostigma viride Iso-seq analysis
show Abstracthide Abstract
This project is to estimate the full-length amino acid sequences of Mesostigma viride (M. viride) photosynthetic proteins with high reliability using the full-length cDNA sequences obtained by an isoform sequencing (Iso-seq) analysis. First, the isoform sequencing (Iso-seq) analysis of M. viride mRNA was done with a PacBio sequel to obtain full-length cDNA sequences. The mRNA RNA was extracted from whole cells of M. viride (NIES-296), which was cultured under long day photoperiod (14h light / 10h of dark). The raw data was processed using SMRT Link v6.0 (Pacific Biosciences) and then further processed by IsoSeq3 tools (version 3.1). The full-length amino acid sequences of M. viride with a minimum length of 100 amino acids were estimated by a TransDecoder program from the high-quality consensus full-length cDNA sequences obtained by the Iso-seq analysis.
Sample: Mesostigma viride NIES-296 whole cell
SAMD00239423 • DRS166054 • All experiments • All runs
Library:
Name: Mesostigma viride Iso-seq
Instrument: Sequel
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol:
Spot descriptor:
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Runs: 1 run, 84,545 spots, 189.1M bases, 46Mb
Run# of Spots# of BasesSizePublished
DRR24059784,545189.1M46Mb2020-12-21

ID:
12696497

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